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1

Molecular dynamics-based simulation of trace amine membrane permeability

Mark D. Berry, Jarrod Nickel, Mithila R. Shitut, Bruno Tomberli

Journal:

Journal of Neural Transmission

Year:

2011

Language:

english

File:

PDF, 530 KB

english, 2011

2

Determination of vapor pressure and solubility correlation of phenolic compounds in supercritical CO2

Marleny D.A. Saldaña, Bruno Tomberli, Selma E. Guigard, Saul Goldman, Chris G. Gray, Feral Temelli

Journal:

The Journal of Supercritical Fluids

Year:

2007

Language:

english

File:

PDF, 850 KB

english, 2007

3

Apparent solubility of lycopene and β-carotene in supercritical CO2, CO2 + ethanol and CO2 + canola oil using dynamic extraction of tomatoes

Marleny D.A. Saldaña, Feral Temelli, Selma E. Guigard, Bruno Tomberli, Chris G. Gray

Journal:

Journal of Food Engineering

Year:

2010

Language:

english

File:

PDF, 374 KB

english, 2010

4

Computer data analysis of the oscillating forward–reverse method

Bryan W. Holland, Shaghayegh Vafaei, Bruno Tomberli

Journal:

Journal of Computational Physics

Year:

2012

Language:

english

File:

PDF, 797 KB

english, 2012

5

Calculating diffusion and permeability coefficients with the oscillating forward-reverse method

Holland, Bryan W., Gray, Chris G., Tomberli, Bruno

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 843 KB

english, 2012

6

Simulation Studies Of Trace Amines Passing Through Neuronal Membranes

Tomberli, Bruno L., Nickel, Jarrod, Berry, Mark

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 76 KB

english, 2009

7

The Simultaneous Determination of Diffusion Coefficients and PMFs Through the OFR Method

Holland, Bryan W., Tomberli, Bruno, Gray, Chris G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 49 KB

english, 2012

8

Scattering Density Profile Model of POPG Bilayers As Determined by Molecular Dynamics Simulations and Small-Angle Neutron and X-ray Scattering Experiments

Kučerka, Norbert, Holland, Bryan W., Gray, Chris G., Tomberli, Bruno, Katsaras, John

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 3.50 MB

english, 2012

9

Dynamic Turn Conformation of a Short Tryptophan-Rich Cationic Antimicrobial Peptide and Its Interaction with Phospholipid Membranes

Nichols, Matthew, Kuljanin, Miljan, Nategholeslam, Mostafa, Hoang, Tuan, Vafaei, Shaghayegh, Tomberli, Bruno, Gray, C. G., DeBruin, Lillian, Jelokhani-Niaraki, Masoud

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

10

Structure of the Antimicrobial Peptide HHC-36 and its Interaction with Model Cell Membranes

NategholEslam, Mostafa, Vafaei, Shaghayegh, Nichols, Matthew, Kuljanin, Miljan, Jelokhani-Niaraki, Masoud, Tomberli, Bruno, Gray, Chris G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 55 KB

english, 2012

11

La tuberculose chez l'enfant

NategholEslam, Mostafa, Vafaei, Shaghayegh, Nichols, Matthew, Kuljanin, Miljan, Jelokhani-Niaraki, Masoud, Tomberli, Bruno, Gray, Chris G.

Journal:

Journal de Pédiatrie et de Puériculture

Year:

1991

Language:

french

File:

PDF, 200 KB

french, 1991

12

The Detailed Scattering Density Profile Model of Pg Bilayers as Determined by Molecular Dynamics Simulations, and Small-Angle Neutron and X-ray Scattering Experiments

Kucerka, Norbert, Holland, Bryan, Pan, Jianjun, Heberle, Frederick A., Gray, Chris G., Tomberli, Bruno, Katsaras, John

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 73 KB

english, 2012

13

Calculating the Free Energy of Antimicrobial Peptide (HHC-10) Aggregation in the Bulk

Vafaei, Shaqa, Nategholeslam, Mostafa, Nichols, Matthew, Kuljanin, Miljan, Jelokhani-Niaraki, Masoud, Tomberli, Bruno, Gray, Chris

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 38 KB

english, 2012

14

Drift-Oscillatory Steering with the Forward-Reverse Method for Calculating the Potential of Mean Force

Holland, Bryan W., NategholEslam, Mostafa, Tomberli, Bruno, Gray, Chris G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

15

Molecular Dynamics of Trace Amine Transport through Neuronal Membranes

Tomberli, Bruno L., Nickel, Jarrod, Shitut, Mithila, Berry, Mark D.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 41 KB

english, 2010

16

Molecular Dynamics Study of the Interaction of HHC-10 with the Mixed POPG/POPE Membrane

NategholEslam, Mostafa, Holland, Bryan, Tomberli, Bruno, Gray, Chris G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 89 KB

english, 2010

17

Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane

Vivcharuk, Victor, Tomberli, Bruno, Tolokh, Igor S., Gray, C. G.

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 353 KB

english, 2008

18

Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane

Tolokh, Igor S., Vivcharuk, Victor, Tomberli, Bruno, Gray, C. G.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 394 KB

english, 2009

19

Membrane permeability of trace amines: Evidence for a regulated, activity-dependent, nonexocytotic, synaptic release

Berry, Mark D., Shitut, Mithila R., Almousa, Ahmed, Alcorn, Jane, Tomberli, Bruno

Journal:

Year:

2013

Language:

english

File:

PDF, 263 KB

english, 2013

20

Drift-oscillatory steering with the forward-reverse method for calculating the potential of mean force

NategholEslam, Mostafa, Holland, Bryan W., Gray, C. G., Tomberli, Bruno

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 463 KB

english, 2011

21

McMillan-Mayer theory of solutions revisited: Simplifications and extensions

Vafaei, Shaghayegh, Tomberli, Bruno, Gray, C. G.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 718 KB

english, 2014

22

Implementation of the Forward–Reverse Method for Calculating the Potential of Mean Force Using a Dynamic Restraining Protocol

Nategholeslam, Mostafa, Gray, C. G., Tomberli, Bruno

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.01 MB

english, 2014

23

Stiff Spring Approximation Revisited: Inertial Effects in Nonequilibrium Trajectories

Nategholeslam, Mostafa, Gray, C. G., Tomberli, Bruno

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 1.86 MB

english, 2017

24

Visualization of Self-sorted Local Atomic Motifs in disordered solids

Rahemtulla, Aly, Tomberli, Bruno, Kycia, Stefan

Journal:

Year:

2018

Language:

english

File:

PDF, 900 KB

english, 2018

25

Visualization of tetrahedral disordering in amorphous germanium through local atomic motifs

Rahemtulla, Aly, Tomberli, Bruno, Kycia, Stefan

Journal:

Journal of Applied Crystallography

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

26

Embolic risk stratification and prognostic impact of early surgery in left-sided infective endocarditis

Scheggi, Valentina, Alterini, Bruno, Olivotto, Iacopo, Del Pace, Stefano, Zoppetti, Nicola, Tomberli, Benedetta, Bartalesi, Filippo, Brandi, Lorenzo, Ceschia, Nicole, Andrei, Valentina, Suardi, Lorenz

Journal:

European Journal of Internal Medicine

Year:

2020

File:

PDF, 847 KB

2020